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Disable CnyPairHMM

This commit is contained in:
sathibault 2013-05-17 08:30:23 -05:00
parent d79b5f0931
commit 195f0c3e98
1 changed files with 10 additions and 1 deletions
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11
protected/java/src/org/broadinstitute/sting/utils/pairhmm/CnyPairHMM.java
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@ -18,7 +18,16 @@ public final class CnyPairHMM extends PairHMM implements BatchPairHMM {
private List<HmmInput> pending = new LinkedList<HmmInput>();
static public boolean isAvailable() {
return true;
return false;
}
public void initialize( final int READ_MAX_LENGTH, final int HAPLOTYPE_MAX_LENGTH ) {
if (!loaded) {
// System.loadLibrary("gmvhdl_gatk_hmm");
// initFpga();
loaded = true;
}
System.out.println("FPGA HMM Initialized");
}
public void batchAdd(final List<Haplotype> haplotypes,