diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/LiftoverVCF.java b/java/src/org/broadinstitute/sting/gatk/walkers/vcf/LiftoverVCF.java similarity index 97% rename from java/src/org/broadinstitute/sting/gatk/walkers/LiftoverVCF.java rename to java/src/org/broadinstitute/sting/gatk/walkers/vcf/LiftoverVCF.java index aa22350d3..c3680dae7 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/LiftoverVCF.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/vcf/LiftoverVCF.java @@ -23,11 +23,12 @@ * THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ -package org.broadinstitute.sting.gatk.walkers; +package org.broadinstitute.sting.gatk.walkers.vcf; import org.broadinstitute.sting.commandline.Argument; import org.broadinstitute.sting.utils.genotype.vcf.VCFWriter; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; +import org.broadinstitute.sting.gatk.walkers.*; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broad.tribble.vcf.VCFRecord; diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java b/java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java similarity index 99% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java rename to java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java index 21f9cbe5a..c4ae8688d 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFCombine.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java @@ -23,7 +23,7 @@ * THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ -package org.broadinstitute.sting.playground.gatk.walkers.vcftools; +package org.broadinstitute.sting.gatk.walkers.vcf; import org.broad.tribble.vcf.VCFHeader; import org.broad.tribble.vcf.VCFHeaderLine;