diff --git a/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java b/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java index a344817a0..ced2bf00b 100755 --- a/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java @@ -19,14 +19,14 @@ public class VariantContextIntegrationTest extends WalkerTest { static HashMap expectations = new HashMap(); static { - expectations.put("-L 1:1-10000 --printPerLocus", "e4ee2eaa3114888e918a1c82df7a027a"); - expectations.put("-L 1:1-10000 --printPerLocus --takeFirstOnly", "5b5635e4877d82e8a27d70dac24bda2f"); - expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsStartinAtCurrentPosition", "ceced3f270b4fe407ee83bc9028becde"); - expectations.put("-L 1:1-10000 --printPerLocus --takeFirstOnly --onlyContextsStartinAtCurrentPosition", "9a9b9e283553c28bf58de1cafa38fe92"); + expectations.put("-L 1:1-10000 --printPerLocus", "e9d96677a57bc3a10fb6d9ba942c19f0"); + expectations.put("-L 1:1-10000 --printPerLocus --takeFirstOnly", "8a1174d2b18b98e624abbe93e6af8fdd"); + expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsStartinAtCurrentPosition", "3933f1fae5453c54c3f791a23de07599"); + expectations.put("-L 1:1-10000 --printPerLocus --takeFirstOnly --onlyContextsStartinAtCurrentPosition", "c9cf2f01bf045a58dcc7649fd6ea2396"); expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType SNP", "2097e32988d603d3b353b50218c86d3b"); - expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType INDEL", "033bd952fca048fe1a4f6422b57ab2ed"); - expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType INDEL --onlyContextsStartinAtCurrentPosition", "5e40980c02797f90821317874426a87a"); - expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType MIXED", "e5a00766f8c1ff9cf92310bafdec3126"); + expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType INDEL", "a103d856e8bc558c949c6e3f184e8913"); + expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType INDEL --onlyContextsStartinAtCurrentPosition", "5f2265ac6c6d80d64dc6e69a05c1250b"); + expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType MIXED", "06a3ae4c0afa23b429a9491ab7707f3c"); expectations.put("-L 1:1-10000 --printPerLocus --onlyContextsOfType NO_VARIATION", "39335acdb34c8a2af433dc50d619bcbc"); } @@ -58,7 +58,7 @@ public class VariantContextIntegrationTest extends WalkerTest { // this really just tests that we are seeing the same number of objects over all of chr1 WalkerTestSpec spec = new WalkerTestSpec( root + " -L 1" + " -o %s", 1, // just one output file - Arrays.asList("529f936aa6c303658b23caf4e527782f")); + Arrays.asList("2532234d2c934a5e14849655dd7b5f4f")); executeTest("testLargeScaleConversion", spec); } }