Bugfix to AssessNA12878

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-- Wasn't handling indel overlaps correctly in SiteIterator.getSitesBefore, causing it to incorrectly skip variants underlying indels (the getSitesBefore was considering both start and stop [not the correct behavior]) causing it to only get sites up to the first record whose stop overlapped the requested start.

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This commit is contained in:

Mark DePristo 2012-12-02 11:09:15 -05:00

parent d7b951b6f3

commit 1828d33a5a

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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