From 18002abb1fd52db1582a374e42f7fbcf93e08af5 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 17 Mar 2011 18:29:46 +0000
Subject: [PATCH] Build.xml contained references to tools now in picard

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5463 348d0f76-0448-11de-a6fe-93d51630548a
---
 build.xml | 31 -------------------------------
 1 file changed, 31 deletions(-)

diff --git a/build.xml b/build.xml
index 1eeee1c9c..ce91d935b 100644
--- a/build.xml
+++ b/build.xml
@@ -401,24 +401,6 @@
           </manifest>
         </jar>
 
-        <jar jarfile="${dist.dir}/ReorderSam.jar" whenmanifestonly="skip">
-          <fileset dir="${java.classes}">
-            <include name="**/tools/**/*.class" />
-          </fileset>
-          <manifest>
-            <attribute name="Main-Class" value="org.broadinstitute.sting.playground.tools.ReorderSam" />
-          </manifest>
-        </jar>
-
-        <jar jarfile="${dist.dir}/ModifyReadGroup.jar" whenmanifestonly="skip">
-          <fileset dir="${java.classes}">
-            <include name="**/tools/**/*.class" />
-          </fileset>
-          <manifest>
-            <attribute name="Main-Class" value="org.broadinstitute.sting.playground.tools.ModifyReadGroup" />
-          </manifest>
-        </jar>
-
         <jar jarfile="${dist.dir}/CompareBAMAlignments.jar" whenmanifestonly="skip">
           <fileset dir="${java.classes}">
             <include name="**/tools/**/*.class" />
@@ -495,19 +477,6 @@
                 <attribute name="Class-Path" value="${jar.classpath}" />
             </manifest>
         </jar>
-
-        <jar jarfile="${dist.dir}/ReorderSam.jar" update="true" whenmanifestonly="skip">
-            <manifest>
-                <attribute name="Class-Path" value="${jar.classpath}" />
-            </manifest>
-        </jar>
-
-        <jar jarfile="${dist.dir}/ModifyReadGroup.jar" update="true" whenmanifestonly="skip">
-            <manifest>
-                <attribute name="Class-Path" value="${jar.classpath}" />
-            </manifest>
-        </jar>
-
     </target>
 
     <target name="queue.manifests" depends="queue.jar, init.manifests" if="scala.include">