diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/RecalibrationArgumentCollection.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/RecalibrationArgumentCollection.java index fc7d8a8a4..e5704a1e2 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/RecalibrationArgumentCollection.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/RecalibrationArgumentCollection.java @@ -75,8 +75,9 @@ public class RecalibrationArgumentCollection { /** * If not provided, then a temporary file is created and then deleted upon completion. + * For advanced users only. */ - @Hidden + @Advanced @Argument(fullName = "intermediate_csv_file", shortName = "intermediate", doc = "The intermediate csv file to create", required = false) public File RECAL_CSV_FILE = null;