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Update MD5s for VQSR header change

This commit is contained in:
Mark DePristo 2013-04-16 11:45:45 -04:00
parent 0ee21e58c3
commit 17982bcbf8
1 changed files with 9 additions and 9 deletions
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18
protected/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
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@ -73,8 +73,8 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
VRTest lowPass = new VRTest(validationDataLocation + "phase1.projectConsensus.chr20.raw.snps.vcf",
"4d08c8eee61dd1bdea8c5765f34e41f0", // tranches
"83756d1058ee3c816edf643148ae20df", // recal file
"06353a59fa4857135b5a63ea0791b035"); // cut VCF
"ca7de32b6143cce58aa4bc59b311feb7", // recal file
"cc7f413ba50b3d12f11f95aaa31e67d1"); // cut VCF
@DataProvider(name = "VRTest")
public Object[][] createData1() {
@ -122,8 +122,8 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
VRTest bcfTest = new VRTest(privateTestDir + "vqsr.bcf_test.snps.unfiltered.bcf",
"6a1eef4d02857dbb117a15420b5c0ce9", // tranches
"ea85f0293e9c016bd1bbe3c2977905d8", // recal file
"4cab4a11130e2f84bd5fe4f9981811bd"); // cut VCF
"db9faaee11ee5427a81ddee328245f8c", // recal file
"42e0fcd8e048a5f6abc41a4d1c3e97a5"); // cut VCF
@DataProvider(name = "VRBCFTest")
public Object[][] createVRBCFTest() {
@ -174,14 +174,14 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
VRTest indelUnfiltered = new VRTest(
validationDataLocation + "combined.phase1.chr20.raw.indels.unfiltered.sites.vcf", // all FILTERs as .
"b7589cd098dc153ec64c02dcff2838e4", // tranches
"6091d44e5c750620c6d5493864eeb160", // recal file
"ef4c7931f134c1c860864772d69dd89c"); // cut VCF
"5a9ba210a3c68109289a71039a04509d", // recal file
"d816bd43c844069d65711a7975707437"); // cut VCF
VRTest indelFiltered = new VRTest(
validationDataLocation + "combined.phase1.chr20.raw.indels.filtered.sites.vcf", // all FILTERs as PASS
"b7589cd098dc153ec64c02dcff2838e4", // tranches
"6091d44e5c750620c6d5493864eeb160", // recal file
"f8decee61f409b6041856c5a20e3865d"); // cut VCF
"5a9ba210a3c68109289a71039a04509d", // recal file
"6bcb344511c727c28523825f73c7daee"); // cut VCF
@DataProvider(name = "VRIndelTest")
public Object[][] createTestVariantRecalibratorIndel() {
@ -239,7 +239,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
" -o %s" +
" -tranchesFile " + privateTestDir + "VQSR.mixedTest.tranches" +
" -recalFile " + privateTestDir + "VQSR.mixedTest.recal",
Arrays.asList("8d2e886523c050e0ea2952cbbde4cc26"));
Arrays.asList("20c23643a78c5b95abd1526fdab8960d"));
executeTest("testApplyRecalibrationSnpAndIndelTogether", spec);
}
}