From 1763a41e9442a4733baabc9dd90358ae1cd8ed72 Mon Sep 17 00:00:00 2001 From: hanna Date: Fri, 8 Apr 2011 02:53:22 +0000 Subject: [PATCH] Oops...broke a Queue compile dependency on the GATK. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5596 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/queue/extensions/gatk/BamGatherFunction.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala index 10de17bb8..bbc4cd67e 100644 --- a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala +++ b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala @@ -50,7 +50,7 @@ class BamGatherFunction extends GatherFunction with PicardBamFunction { val compression = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.COMPRESSION_FULLNAME) this.compressionLevel = originalGATK.getFieldValue(compression).asInstanceOf[Option[Int]] - val indexBam = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.CREATE_INDEX_FULLNAME) + val indexBam = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.DISABLE_INDEXING_FULLNAME) this.createIndex = originalGATK.getFieldValue(indexBam).asInstanceOf[Option[Boolean]] super.freezeFieldValues