diff --git a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala index 10de17bb8..bbc4cd67e 100644 --- a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala +++ b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/BamGatherFunction.scala @@ -50,7 +50,7 @@ class BamGatherFunction extends GatherFunction with PicardBamFunction { val compression = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.COMPRESSION_FULLNAME) this.compressionLevel = originalGATK.getFieldValue(compression).asInstanceOf[Option[Int]] - val indexBam = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.CREATE_INDEX_FULLNAME) + val indexBam = QFunction.findField(originalFunction.getClass, SAMFileWriterArgumentTypeDescriptor.DISABLE_INDEXING_FULLNAME) this.createIndex = originalGATK.getFieldValue(indexBam).asInstanceOf[Option[Boolean]] super.freezeFieldValues