zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Turn on new TraverseLociByReference is now only dependent on the -et flag. REGION_STR does not matter. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@454 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-16 19:45:47 +00:00
parent 12e1f192c4
commit 165e504d1c
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
View File

@ -262,7 +262,7 @@ public class GenomeAnalysisTK extends CommandLineProgram {
if ( WALK_ALL_LOCI ) { if ( WALK_ALL_LOCI ) {
// TODO: Temporary debugging code. Activate the new debugging code only when the MicroManager // TODO: Temporary debugging code. Activate the new debugging code only when the MicroManager
// is not filtered. // is not filtered.
if( ENABLE_THREADING && REGION_STR == null ) { if( ENABLE_THREADING ) {
logger.warn("Preliminary threading support enabled"); logger.warn("Preliminary threading support enabled");
microManager = new MicroManager( INPUT_FILE, REF_FILE_ARG, numThreads ); microManager = new MicroManager( INPUT_FILE, REF_FILE_ARG, numThreads );
this.engine = microManager.getTraversalEngine(); this.engine = microManager.getTraversalEngine();