From 15dfac6bf7c6cbbaf886c17b0bd53a1ac1662c2b Mon Sep 17 00:00:00 2001 From: ebanks Date: Thu, 24 Feb 2011 20:21:58 +0000 Subject: [PATCH] Updating integration test to be in sync with previous commit git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5309 348d0f76-0448-11de-a6fe-93d51630548a --- .../indels/RealignerTargetCreatorIntegrationTest.java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorIntegrationTest.java index 11a4f7bd8..acfcbab7b 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorIntegrationTest.java @@ -11,15 +11,15 @@ public class RealignerTargetCreatorIntegrationTest extends WalkerTest { public void testIntervals() { WalkerTest.WalkerTestSpec spec1 = new WalkerTest.WalkerTestSpec( - "-T RealignerTargetCreator -R " + b36KGReference + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -L 1:10,000,000-10,050,000 -o %s --realignReadsWithBadMates", + "-T RealignerTargetCreator -R " + b36KGReference + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -L 1:10,000,000-10,050,000 -o %s", 1, - Arrays.asList("d21e83a8b0d3f63acd9ca3b0b636e515")); + Arrays.asList("e7accfa58415d6da80383953b1a3a986")); executeTest("test standard", spec1); WalkerTest.WalkerTestSpec spec2 = new WalkerTest.WalkerTestSpec( - "-T RealignerTargetCreator -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_b36.rod -R " + b36KGReference + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -L 1:10,000,000-10,050,000 -o %s --realignReadsWithBadMates", + "-T RealignerTargetCreator -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_b36.rod -R " + b36KGReference + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -L 1:10,000,000-10,050,000 -o %s", 1, - Arrays.asList("bfccfa50f62d10ee2fe8cfa68fb70002")); + Arrays.asList("fd2d9dbf718f7a6d82ae1787ac1fe61e")); executeTest("test dbsnp", spec2); WalkerTest.WalkerTestSpec spec3 = new WalkerTest.WalkerTestSpec(