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logger.info -> logger.debug (don't want to risk filling up my log on genome-wide calls) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1792 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-10-08 17:53:11 +00:00
parent df8ea8f437
commit 15bf014e0b
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperWalker.java
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@ -781,8 +781,8 @@ public class IndelGenotyperWalker extends ReadWalker<Integer,Integer> {
if ( type == null ) continue; // element was not an indel, go grab next element...
// we got an indel if we are here...
if ( i == 0 ) logger.warn("Indel at the start of the read "+r.getReadName());
if ( i == nCigarElems - 1) logger.warn("Indel at the end of the read "+r.getReadName());
if ( i == 0 ) logger.debug("Indel at the start of the read "+r.getReadName());
if ( i == nCigarElems - 1) logger.debug("Indel at the end of the read "+r.getReadName());
try {
// note that here we will be assigning indels to the first deleted base or to the first