Once I was playing with integration tests it was simple to fix the ones I left broken from earlier today.
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@ -128,7 +128,7 @@ public class SelectVariantsIntegrationTest extends WalkerTest {
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WalkerTestSpec spec = new WalkerTestSpec(
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WalkerTestSpec spec = new WalkerTestSpec(
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"-T SelectVariants -R " + b36KGReference + " -regenotype -sn NA12892 --variant " + testFile + " -o %s --no_cmdline_in_header",
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"-T SelectVariants -R " + b36KGReference + " -regenotype -sn NA12892 --variant " + testFile + " -o %s --no_cmdline_in_header",
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1,
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1,
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Arrays.asList("5bf9663274ceb552f5469f8c1dfc22ed")
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Arrays.asList("be38bdc7bd88f5d09cf1a9d55cfecb0b")
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);
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);
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executeTest("testRegenotype--" + testFile, spec);
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executeTest("testRegenotype--" + testFile, spec);
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