From 15135788caf7a29042db63b5c9b8394335bf87cb Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 21 Sep 2009 19:25:16 +0000
Subject: [PATCH] OK, let's bite the bullet. Now rodDbSNP objects are 'isSNP()'
 only when they are annotated as 'exact', not a 'range'.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1673 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
index 00f36ad9c..5d2250b93 100644
--- a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
@@ -157,7 +157,7 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements Variation, V
     //
     // ----------------------------------------------------------------------
     public boolean isSNP() {
-        return varType.contains("single");
+        return varType.contains("single") && locType.contains("exact");
     }
 
     public boolean isInsertion() {