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OK, let's bite the bullet. Now rodDbSNP objects are 'isSNP()' only when they are annotated as 'exact', not a 'range'. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1673 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-09-21 19:25:16 +00:00
parent 8ad181f46f
commit 15135788ca
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
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@ -157,7 +157,7 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements Variation, V
//
// ----------------------------------------------------------------------
public boolean isSNP() {
return varType.contains("single");
return varType.contains("single") && locType.contains("exact");
}
public boolean isInsertion() {