From 14b8101d45f3a99ae648935610e6b091512e79a7 Mon Sep 17 00:00:00 2001 From: hanna Date: Mon, 12 Apr 2010 01:19:01 +0000 Subject: [PATCH] Error message fail. Failed to supply one of the valid interval file types. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3153 348d0f76-0448-11de-a6fe-93d51630548a --- .../org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java index c00590e85..8cc8e6d93 100755 --- a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java @@ -292,7 +292,7 @@ public class GenomeAnalysisEngine { /** * Check if string argument was intented as a file - * Accepted file extensions: .list, .interval_list, .bed, .picard + * Accepted file extensions: .bed .list, .interval_list, .bed, .picard */ private static boolean isFile(String str) { // should we define list of file extensions as a public array somewhere? @@ -304,7 +304,7 @@ public class GenomeAnalysisEngine { if(new File(str).exists()) throw new StingException("Interval argument looks like a filename, but does not have one of " + - "the supported extensions (.bed, .picard, .interval_list, or .intervals). " + + "the supported extensions (.bed, .list, .picard, .interval_list, or .intervals). " + "Please rename your file with the appropriate extension."); else return false;