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Error message fail. Failed to supply one of the valid interval file types. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3153 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-04-12 01:19:01 +00:00
parent 60d54e69f3
commit 14b8101d45
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
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@ -292,7 +292,7 @@ public class GenomeAnalysisEngine {
/**
* Check if string argument was intented as a file
* Accepted file extensions: .list, .interval_list, .bed, .picard
* Accepted file extensions: .bed .list, .interval_list, .bed, .picard
*/
private static boolean isFile(String str) {
// should we define list of file extensions as a public array somewhere?
@ -304,7 +304,7 @@ public class GenomeAnalysisEngine {
if(new File(str).exists())
throw new StingException("Interval argument looks like a filename, but does not have one of " +
"the supported extensions (.bed, .picard, .interval_list, or .intervals). " +
"the supported extensions (.bed, .list, .picard, .interval_list, or .intervals). " +
"Please rename your file with the appropriate extension.");
else return false;