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Merge pull request #701 from broadinstitute/gg_amend_ET_doc_76823436 

Clarified Phone Home system details re: privacy
This commit is contained in:
Eric Banks 2014-08-12 17:40:46 -04:00
parent 6d7201a7f8 49702dc695
commit 149f98e28a
1 changed files with 8 additions and 5 deletions
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13
public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/engine/arguments/GATKArgumentCollection.java
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@ -78,15 +78,18 @@ public class GATKArgumentCollection {
/** /**
* By default, GATK generates a run report that is uploaded to a cloud-based service. This report contains basic * By default, GATK generates a run report that is uploaded to a cloud-based service. This report contains basic
* non-identifying statistics (which tool was used, whether the run was successful etc.) that help us for debugging * statistics about the run (which tool was used, whether the run was successful etc.) that help us for debugging
* and development. You can use this option to turn off reporting if your run environment is not connected to the * and development. Up to version 3.2-2 the run report contains a record of the username and hostname associated
* internet or if your data is subject to stringent confidentiality clauses (e.g. clinical patient data). * with the run, but it does **NOT** contain any information that could be used to identify patient data.
* To do so you will need to request a key using the online request form on our website. * Nevertheless, if your data is subject to stringent confidentiality clauses (no outside communication) or if your
* run environment is not connected to the internet, you can disable the reporting system by seeting this option to
* "NO_ET". You will also need to request a key using the online request form on our website (se FAQs).
*/ */
@Argument(fullName = "phone_home", shortName = "et", doc="Run reporting mode", required = false) @Argument(fullName = "phone_home", shortName = "et", doc="Run reporting mode", required = false)
public GATKRunReport.PhoneHomeOption phoneHomeType = GATKRunReport.PhoneHomeOption.AWS; public GATKRunReport.PhoneHomeOption phoneHomeType = GATKRunReport.PhoneHomeOption.AWS;
/** /**
* Please see the online documentation FAQs for more details on the key system and how to request a key. * Please see the "phone_home" argument below and the online documentation FAQs for more details on the key system
* and how to request a key.
*/ */
@Argument(fullName = "gatk_key", shortName = "K", doc="GATK key file required to run with -et NO_ET", required = false) @Argument(fullName = "gatk_key", shortName = "K", doc="GATK key file required to run with -et NO_ET", required = false)
public File gatkKeyFile = null; public File gatkKeyFile = null;