From 140e43b93b497e272f9928f50b035553e8567021 Mon Sep 17 00:00:00 2001 From: ebanks Date: Tue, 11 May 2010 15:39:42 +0000 Subject: [PATCH] Checking in to see whether it fails. If I start getting bombarded with Bamboo error reports, I'm commenting it out... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3346 348d0f76-0448-11de-a6fe-93d51630548a --- .../UnifiedGenotyperPerformanceTest.java | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java index 771d32195..1cf2cef38 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java @@ -32,4 +32,19 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest { new ArrayList(0)); executeTest("testUnifiedGenotyperWholeExome", spec); } + + @Test + public void testUnifiedGenotyperWGParallel() { + WalkerTestSpec spec = new WalkerTestSpec( + "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" + + " -T UnifiedGenotyper" + + " -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" + + " -L chr1:1-50,000,000" + + " -nt 10" + + " -varout /dev/null", + 0, + new ArrayList(0)); + executeTest("testUnifiedGenotyperWGParallel", spec); + } + } \ No newline at end of file