From 133712faec1a9fb4a610332969ab318c72062422 Mon Sep 17 00:00:00 2001
From: carneiro <carneiro@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 23 May 2011 21:46:14 +0000
Subject: [PATCH] Have a list of bam files but Picard updated their versions
 from v1 to v17 ?  This script will update all your v* numbers for you.

PS: don't hate Lua. :-)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5857 348d0f76-0448-11de-a6fe-93d51630548a
---
 lua/updateSampleList.lua | 14 ++++++++++++++
 1 file changed, 14 insertions(+)
 create mode 100644 lua/updateSampleList.lua

diff --git a/lua/updateSampleList.lua b/lua/updateSampleList.lua
new file mode 100644
index 000000000..0480f6d7b
--- /dev/null
+++ b/lua/updateSampleList.lua
@@ -0,0 +1,14 @@
+function latestVersion(sample)
+  local version = tonumber(sample:match("/v(%d+)/"))
+  f = io.open(sample)
+  while (f == nil) do
+    version = version + 1
+    sample = sample:gsub("/v(%d+)/", "/v"..version.."/")
+    f = io.open(sample)
+  end
+  return(sample)
+end
+
+for sample in io.lines(arg[1]) do
+  print(latestVersion(sample))
+end