zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Unconditionally include all of commons-httpclient in the GATK/Queue jars 

The maven shade plugin was eliminating a necessary class (IgnoreCookiesSpec)
when packaging the GATK/Queue. Work around this by telling maven to
always package all of commons-httpclient.
This commit is contained in:
David Roazen 2014-03-14 10:50:15 -04:00
parent 7c7ff90266
commit 1324120c17
3 changed files with 15 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5
public/gatk-package/pom.xml
View File

@ -43,6 +43,11 @@
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</dependency>
<!-- Workaround - depend on commons-httpclient to prevent shade from eliminating IgnoreCookiesSpec class -->
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
</dependency>
<!-- Required for binary-dist assembly, excluded by shade -->
<dependency>
<groupId>${project.groupId}</groupId>

5
public/queue-package/pom.xml
View File

@ -67,6 +67,11 @@
<groupId>net.sf.snpeff</groupId>
<artifactId>snpeff</artifactId>
</dependency>
<!-- Workaround - depend on commons-httpclient to prevent shade from eliminating IgnoreCookiesSpec class -->
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
</dependency>
<!-- Required for binary-dist assembly, excluded by shade -->
<dependency>
<groupId>${project.groupId}</groupId>

5
public/sting-root/pom.xml
View File

@ -188,6 +188,11 @@
<artifactId>commons-collections</artifactId>
<version>3.2.1</version>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
<version>3.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math</artifactId>