From 12a8c54f9ac0ba89080249ab27ea118a8e832f24 Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Fri, 1 Jun 2012 15:45:15 -0400
Subject: [PATCH] Fixing VCF header for filter elements (thanks Eric)

---
 .../gatk/walkers/diagnostics/targets/DiagnoseTargets.java     | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargets.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargets.java
index 10306b116..b96e6cf1c 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargets.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargets.java
@@ -158,7 +158,7 @@ public class DiagnoseTargets extends LocusWalker<Long, Long> {
         addNewOverlappingIntervals(refLocus);                                                                           // add all new intervals that may overlap this reference locus    
 
         for (IntervalStatistics intervalStatistics : intervalMap.values())
-            intervalStatistics.addLocus(context, ref, thresholds);                                                                       // Add current locus to stats
+            intervalStatistics.addLocus(context, ref, thresholds);                                                      // Add current locus to stats
 
         return 1L;
     }
@@ -312,7 +312,7 @@ public class DiagnoseTargets extends LocusWalker<Long, Long> {
 
         // FILTER fields
         for (CallableStatus stat : CallableStatus.values())
-            headerLines.add(new VCFHeaderLine(stat.name(), stat.description));
+            headerLines.add(new VCFFilterHeaderLine(stat.name(), stat.description));
 
         return headerLines;
     }