zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Forgot to initialize variants on the merge

This commit is contained in:
Eric Banks 2011-08-15 16:00:43 -04:00
parent 045e8a045e
commit 1246b89049
1 changed files with 2 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
public/java/src/org/broadinstitute/sting/gatk/walkers/fasta/FastaAlternateReferenceWalker.java
View File

@ -35,6 +35,7 @@ import org.broadinstitute.sting.utils.GenomeLoc;
import org.broadinstitute.sting.utils.collections.Pair; import org.broadinstitute.sting.utils.collections.Pair;
import org.broadinstitute.sting.utils.variantcontext.VariantContext; import org.broadinstitute.sting.utils.variantcontext.VariantContext;
import java.util.Collections;
import java.util.List; import java.util.List;
@ -49,7 +50,7 @@ import java.util.List;
public class FastaAlternateReferenceWalker extends FastaReferenceWalker { public class FastaAlternateReferenceWalker extends FastaReferenceWalker {
@Input(fullName = "variant", shortName = "V", doc="variants to model", required=false) @Input(fullName = "variant", shortName = "V", doc="variants to model", required=false)
public List<RodBinding<VariantContext>> variants; public List<RodBinding<VariantContext>> variants = Collections.emptyList();
@Input(fullName="snpmask", shortName = "snpmask", doc="SNP mask VCF file", required=false) @Input(fullName="snpmask", shortName = "snpmask", doc="SNP mask VCF file", required=false)
public RodBinding<VariantContext> snpmask; public RodBinding<VariantContext> snpmask;