diff --git a/public/java/test/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedViewUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedViewUnitTest.java index d55c48054..eaa098793 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedViewUnitTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedViewUnitTest.java @@ -121,7 +121,7 @@ public class ReadBasedReferenceOrderedViewUnitTest extends BaseTest { // test in the present of a large spanning element { List oneLargeSpan = new ArrayList(handPickedFeatures); - oneLargeSpan.add(new BasicFeature(contig, 1, 100)); + oneLargeSpan.add(new BasicFeature(contig, 1, 30)); createTestsForFeatures(oneLargeSpan); } @@ -135,7 +135,7 @@ public class ReadBasedReferenceOrderedViewUnitTest extends BaseTest { // test in the presence of a partially spanning element at the end { List partialSpanEnd = new ArrayList(handPickedFeatures); - partialSpanEnd.add(new BasicFeature(contig, 10, 100)); + partialSpanEnd.add(new BasicFeature(contig, 10, 30)); createTestsForFeatures(partialSpanEnd); } @@ -165,7 +165,7 @@ public class ReadBasedReferenceOrderedViewUnitTest extends BaseTest { int featuresStart = 1; for ( final Feature f : features ) featuresStart = Math.min(featuresStart, f.getStart()); int featuresStop = 1; for ( final Feature f : features ) featuresStop = Math.max(featuresStop, f.getEnd()); - for ( final int size : Arrays.asList(1, 5, 10, 100, 1000) ) { + for ( final int size : Arrays.asList(1, 5, 10, 100) ) { final List allIntervals = new ArrayList(); // regularly spaced for ( int start = featuresStart; start < featuresStop; start++) { @@ -256,11 +256,12 @@ public class ReadBasedReferenceOrderedViewUnitTest extends BaseTest { } // all 3 way pairwise tests - for ( List singleTest : Utils.makePermutations(multiSiteTests, 3, false)) { - tests.add(new Object[]{singleTest, testStateless}); - } + //for ( List singleTest : Utils.makePermutations(multiSiteTests, 3, false)) { + // tests.add(new Object[]{singleTest, testStateless}); + //} } + logger.warn("Creating " + tests.size() + " tests for ReadMetaDataTrackerTests"); return tests.toArray(new Object[][]{}); }