From 11abb4f9d1173992d0576ee04db4c7c7cdaf5341 Mon Sep 17 00:00:00 2001 From: Christopher Hartl Date: Wed, 9 Nov 2011 11:25:28 -0500 Subject: [PATCH] Better error message. --- .../sting/gatk/walkers/annotator/MVLikelihoodRatio.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/MVLikelihoodRatio.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/MVLikelihoodRatio.java index 8da64608f..bd0d4e3fb 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/MVLikelihoodRatio.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/MVLikelihoodRatio.java @@ -37,7 +37,7 @@ public class MVLikelihoodRatio extends InfoFieldAnnotation implements Experiment mendelianViolation = new MendelianViolation(((VariantAnnotator)walker).familyStr, ((VariantAnnotator)walker).minGenotypeQualityP ); } else { - throw new UserException("Mendelian violation annotation can only be used from the Variant Annotator"); + throw new UserException("Mendelian violation annotation can only be used from the Variant Annotator, and must be provided a valid Family String file (-family) on the command line."); } }