From 112a283f5489fcbbe897a68892b1b8b0466b7f03 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 12 Aug 2009 20:19:56 +0000
Subject: [PATCH] be nice, don't forget to close the reader when done

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1418 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../org/broadinstitute/sting/playground/tools/SplitReads.java    | 1 +
 1 file changed, 1 insertion(+)

diff --git a/java/src/org/broadinstitute/sting/playground/tools/SplitReads.java b/java/src/org/broadinstitute/sting/playground/tools/SplitReads.java
index 572d70edc..37cf040b8 100644
--- a/java/src/org/broadinstitute/sting/playground/tools/SplitReads.java
+++ b/java/src/org/broadinstitute/sting/playground/tools/SplitReads.java
@@ -123,6 +123,7 @@ public class SplitReads extends CommandLineProgram {
 
         }
 
+        inReader.close();
         for ( SAMFileWriter w : outWriters ) w.close();
 
         return 0;