From 110886e8b9d93d0b6ed80d2b87ad375c8764773b Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Tue, 17 Jul 2012 13:37:11 -0400
Subject: [PATCH] Oops, got the logic wrong.

---
 .../src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java b/public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
index 57ec53fe4..29bf5c245 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
@@ -207,7 +207,7 @@ public class GenomeAnalysisEngine {
      */
     public boolean isGATKLite() {
         if ( isLiteVersion == null ) {
-            isLiteVersion = new PluginManager<Object>(Object.class).exists(DummyProtectedWalkerName);
+            isLiteVersion = !(new PluginManager<Object>(Object.class).exists(DummyProtectedWalkerName));
         }
         return isLiteVersion;
     }