From b7a59e01aa4031d9e97e689692fe820759ce3de4 Mon Sep 17 00:00:00 2001 From: Carlos Borroto Date: Sat, 26 Apr 2014 12:41:47 -0400 Subject: [PATCH] Removed setting of a default queue in PbsEngineJobRunner. Discussed here: http://gatkforums.broadinstitute.org/discussion/3959/would-it-be-possible-for-pbsengine-jobrunner-not-to-set-a-default-queue Signed-off-by: Khalid Shakir --- .../sting/queue/engine/pbsengine/PbsEngineJobRunner.scala | 2 -- 1 file changed, 2 deletions(-) diff --git a/public/queue-framework/src/main/scala/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala b/public/queue-framework/src/main/scala/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala index 2f5053f4a..c2b2f8465 100644 --- a/public/queue-framework/src/main/scala/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala +++ b/public/queue-framework/src/main/scala/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala @@ -54,8 +54,6 @@ class PbsEngineJobRunner(session: Session, function: CommandLineFunction) extend // If the job queue is set specify the job queue if (function.jobQueue != null) nativeSpec += " -q " + function.jobQueue - else - nativeSpec += " -q normal " // If the resident set size is requested pass on the memory request // mem_free is the standard, but may also be virtual_free or even not available