diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/BaseTransitionTableCalculatorJavaIntegrationTest.java b/java/test/org/broadinstitute/sting/playground/gatk/walkers/BaseTransitionTableCalculatorJavaIntegrationTest.java
new file mode 100644
index 000000000..382262dc3
--- /dev/null
+++ b/java/test/org/broadinstitute/sting/playground/gatk/walkers/BaseTransitionTableCalculatorJavaIntegrationTest.java
@@ -0,0 +1,28 @@
+package org.broadinstitute.sting.playground.gatk.walkers;
+
+import org.junit.Test;
+import org.broadinstitute.sting.WalkerTest;
+
+import java.util.Arrays;
+
+/**
+ * Created by IntelliJ IDEA.
+ * User: chartl
+ * Date: Oct 19, 2009
+ * Time: 1:57:59 PM
+ * To change this template use File | Settings | File Templates.
+ */
+public class BaseTransitionTableCalculatorJavaIntegrationTest extends WalkerTest{
+
+    public static final String OUTPUT_MD5 = "856a3124fb078b4d820f935369ec53cc";
+    public static final String LOCUS = "1:10,000,000-10,200,000";
+    public static final String BAM_FILE = "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam";
+    public static final String REFERENCE = "/broad/1KG/reference/human_b36_both.fasta";
+
+    @Test
+    public void testBaseTransitionTableCalculatorJava() {
+        String args = "-T BaseTransitionTableCalculatorJava -o %s -I "+BAM_FILE+" -L "+LOCUS+" -R "+REFERENCE;
+        WalkerTest.WalkerTestSpec spec =  new WalkerTest.WalkerTestSpec(args,1,Arrays.asList(OUTPUT_MD5));
+        executeTest("testBaseTransitionTableCalculatorJava", spec);
+    }
+}