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From Carlos Barroto: switch outputRoot in SplitSamFile to an empty string instead of null.

This commit is contained in:
Eric Banks 2014-06-19 10:05:51 -04:00
parent 9212edba41
commit 1092dd6e25
1 changed files with 1 additions and 1 deletions
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2
public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/readutils/SplitSamFile.java
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@ -57,7 +57,7 @@ import java.util.Map;
@Requires({DataSource.READS})
public class SplitSamFile extends ReadWalker<SAMRecord, Map<String, SAMFileWriter>> {
@Argument(fullName="outputRoot", doc="output BAM file", required=false)
public String outputRoot = null;
public String outputRoot = "";
@Argument(fullName = "bam_compression", shortName = "compress", doc = "Compression level to use for writing BAM files", required = false)
public Integer BAMcompression = 5;