zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Minor file cleanup

This commit is contained in:
Mark DePristo 2011-09-23 08:25:20 -04:00
parent a9f073fa68
commit 106a26c42d
1 changed files with 1 additions and 7 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

8
public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextUtilsUnitTest.java
View File

@ -24,18 +24,14 @@
package org.broadinstitute.sting.utils.variantcontext; package org.broadinstitute.sting.utils.variantcontext;
import net.sf.picard.reference.IndexedFastaSequenceFile; import net.sf.picard.reference.IndexedFastaSequenceFile;
import org.apache.log4j.Priority;
import org.broadinstitute.sting.BaseTest; import org.broadinstitute.sting.BaseTest;
import org.broadinstitute.sting.gatk.refdata.tracks.FeatureManager;
import org.broadinstitute.sting.utils.GenomeLocParser; import org.broadinstitute.sting.utils.GenomeLocParser;
import org.broadinstitute.sting.utils.codecs.vcf.VCFConstants;
import org.broadinstitute.sting.utils.exceptions.UserException; import org.broadinstitute.sting.utils.exceptions.UserException;
import org.broadinstitute.sting.utils.fasta.CachingIndexedFastaSequenceFile; import org.broadinstitute.sting.utils.fasta.CachingIndexedFastaSequenceFile;
import org.testng.Assert; import org.testng.Assert;
import org.testng.annotations.BeforeSuite; import org.testng.annotations.BeforeSuite;
import org.testng.annotations.Test;
import org.testng.annotations.DataProvider; import org.testng.annotations.DataProvider;
import org.yaml.snakeyaml.Yaml; import org.testng.annotations.Test;
import java.io.File; import java.io.File;
import java.io.FileNotFoundException; import java.io.FileNotFoundException;
@ -446,8 +442,6 @@ public class VariantContextUtilsUnitTest extends BaseTest {
return MergeGenotypesTest.getTests(MergeGenotypesTest.class); return MergeGenotypesTest.getTests(MergeGenotypesTest.class);
} }
// todo -- add test for GenotypeMergeType UNIQUIFY, REQUIRE_UNIQUE
@Test(dataProvider = "mergeGenotypes") @Test(dataProvider = "mergeGenotypes")
public void testMergeGenotypes(MergeGenotypesTest cfg) { public void testMergeGenotypes(MergeGenotypesTest cfg) {
final VariantContext merged = VariantContextUtils.simpleMerge(genomeLocParser, final VariantContext merged = VariantContextUtils.simpleMerge(genomeLocParser,