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Huh, somehow this change didn't make it through last time 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5639 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2011-04-14 17:09:37 +00:00
parent 47fa7e2227
commit 104d5515fe
1 changed files with 0 additions and 3 deletions
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3
scala/qscript/playground/BatchMerge.q
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@ -79,9 +79,6 @@ class batchMergePipeline extends QScript {
this.memoryLimit = 8 this.memoryLimit = 8
this.output_mode = UnifiedGenotyperEngine.OUTPUT_MODE.EMIT_ALL_SITES this.output_mode = UnifiedGenotyperEngine.OUTPUT_MODE.EMIT_ALL_SITES
this.genotyping_mode = GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES this.genotyping_mode = GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES
if ( batchMerge.indelMode ) {
this.genotype_likelihoods_model = GenotypeLikelihoodsCalculationModel.Model.DINDEL
}
} }
var cVars : UGCallVariants = new UGCallVariants with CallVariantsArgs var cVars : UGCallVariants = new UGCallVariants with CallVariantsArgs