diff --git a/scala/qscript/playground/BatchMerge.q b/scala/qscript/playground/BatchMerge.q index 6cee6cc28..a2d6bcd08 100755 --- a/scala/qscript/playground/BatchMerge.q +++ b/scala/qscript/playground/BatchMerge.q @@ -79,9 +79,6 @@ class batchMergePipeline extends QScript { this.memoryLimit = 8 this.output_mode = UnifiedGenotyperEngine.OUTPUT_MODE.EMIT_ALL_SITES this.genotyping_mode = GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES - if ( batchMerge.indelMode ) { - this.genotype_likelihoods_model = GenotypeLikelihoodsCalculationModel.Model.DINDEL - } } var cVars : UGCallVariants = new UGCallVariants with CallVariantsArgs