From 10427f81910e36516d2572ee7fde02a1154d0e28 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 13 Mar 2009 16:00:23 +0000
Subject: [PATCH] Bad merge has been fixed!

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@46 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../java/src/org/broadinstitute/sting/atk/AnalysisTK.java       | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/playground/java/src/org/broadinstitute/sting/atk/AnalysisTK.java b/playground/java/src/org/broadinstitute/sting/atk/AnalysisTK.java
index 4b323632c..bb9e0e3c1 100644
--- a/playground/java/src/org/broadinstitute/sting/atk/AnalysisTK.java
+++ b/playground/java/src/org/broadinstitute/sting/atk/AnalysisTK.java
@@ -77,7 +77,7 @@ public class AnalysisTK extends CommandLineProgram {
         this.engine = new TraversalEngine(INPUT_FILE, REF_FILE_ARG, rods);
         engine.initialize(ENABLED_THREADED_IO.toLowerCase().equals("true"));
         //engine.testReference();
-        
+
         ValidationStringency strictness;
     	if ( STRICTNESS_ARG == null ) {
             strictness = ValidationStringency.STRICT;