zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Mark DePristo 2012-01-27 10:12:50 -05:00
parent 13d1626f51 ec9920b04f
commit 0f2e8400b5
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java
View File

@ -45,7 +45,7 @@ import java.util.Map;
public class GATKSAMRecord extends BAMRecord {
// ReduceReads specific attribute tags
public static final String REDUCED_READ_CONSENSUS_TAG = "RR"; // marks a synthetic read produced by the ReduceReads tool
public static final String REDUCED_READ_ORIGINAL_ALIGNMENT_START_SHIFT = "OS"; // reads that are clipped may use this attribute to keep track of their original alignment start
public static final String REDUCED_READ_ORIGINAL_ALIGNMENT_START_SHIFT = "OP"; // reads that are clipped may use this attribute to keep track of their original alignment start
public static final String REDUCED_READ_ORIGINAL_ALIGNMENT_END_SHIFT = "OE"; // reads that are clipped may use this attribute to keep track of their original alignment end
// the SAMRecord data we're caching