diff --git a/java/src/org/broadinstitute/sting/utils/CardinalityCounter.java b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/CardinalityCounter.java similarity index 98% rename from java/src/org/broadinstitute/sting/utils/CardinalityCounter.java rename to java/src/org/broadinstitute/sting/gatk/walkers/phasing/CardinalityCounter.java index 90181e37d..06f4d3ab2 100644 --- a/java/src/org/broadinstitute/sting/utils/CardinalityCounter.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/CardinalityCounter.java @@ -21,7 +21,7 @@ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR * OTHER DEALINGS IN THE SOFTWARE. */ -package org.broadinstitute.sting.utils; +package org.broadinstitute.sting.gatk.walkers.phasing; import org.broadinstitute.sting.utils.exceptions.ReviewedStingException; diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhasingRead.java b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhasingRead.java index 343196bb2..a56c9e21e 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhasingRead.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhasingRead.java @@ -24,7 +24,6 @@ package org.broadinstitute.sting.gatk.walkers.phasing; import org.broadinstitute.sting.utils.BaseUtils; -import org.broadinstitute.sting.utils.PreciseNonNegativeDouble; import org.broadinstitute.sting.utils.QualityUtils; import org.broadinstitute.sting.utils.exceptions.ReviewedStingException; diff --git a/java/src/org/broadinstitute/sting/utils/PreciseNonNegativeDouble.java b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PreciseNonNegativeDouble.java similarity index 98% rename from java/src/org/broadinstitute/sting/utils/PreciseNonNegativeDouble.java rename to java/src/org/broadinstitute/sting/gatk/walkers/phasing/PreciseNonNegativeDouble.java index d8921e1d3..99446705e 100644 --- a/java/src/org/broadinstitute/sting/utils/PreciseNonNegativeDouble.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PreciseNonNegativeDouble.java @@ -21,7 +21,7 @@ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR * OTHER DEALINGS IN THE SOFTWARE. */ -package org.broadinstitute.sting.utils; +package org.broadinstitute.sting.gatk.walkers.phasing; /* PreciseNonNegativeDouble permits arithmetic operations on NON-NEGATIVE double values with precision (prevents underflow by representing in log10 space).