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Phasing-specific utilies are now in the Phasing walker 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5839 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2011-05-22 18:51:35 +00:00
parent a1349f3520
commit 0dc0d586f1
3 changed files with 2 additions and 3 deletions
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2
java/src/org/broadinstitute/sting/utils/CardinalityCounter.java → java/src/org/broadinstitute/sting/gatk/walkers/phasing/CardinalityCounter.java
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@ -21,7 +21,7 @@
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.utils;
package org.broadinstitute.sting.gatk.walkers.phasing;
import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;

1
java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhasingRead.java
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@ -24,7 +24,6 @@
package org.broadinstitute.sting.gatk.walkers.phasing;
import org.broadinstitute.sting.utils.BaseUtils;
import org.broadinstitute.sting.utils.PreciseNonNegativeDouble;
import org.broadinstitute.sting.utils.QualityUtils;
import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;

2
java/src/org/broadinstitute/sting/utils/PreciseNonNegativeDouble.java → java/src/org/broadinstitute/sting/gatk/walkers/phasing/PreciseNonNegativeDouble.java
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@ -21,7 +21,7 @@
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.utils;
package org.broadinstitute.sting.gatk.walkers.phasing;
/* PreciseNonNegativeDouble permits arithmetic operations on NON-NEGATIVE double values
with precision (prevents underflow by representing in log10 space).