diff --git a/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/GenomeLoc.java b/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/GenomeLoc.java index c913e6efd..d41072adb 100644 --- a/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/GenomeLoc.java +++ b/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/GenomeLoc.java @@ -62,6 +62,7 @@ public class GenomeLoc implements Comparable, Serializable, HasGenome // TODO - WARNING WARNING WARNING code somehow depends on the name of the contig being null! public static final GenomeLoc UNMAPPED = new GenomeLoc((String)null); public static final GenomeLoc WHOLE_GENOME = new GenomeLoc("all"); + public static final GenomeLoc END_OF_GENOME = new GenomeLoc("Y", 23, 59347566, 59347566); public static final boolean isUnmapped(GenomeLoc loc) { return loc == UNMAPPED;