diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLocusWindows.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLocusWindows.java
index 978c6ed5c..3af4db628 100755
--- a/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLocusWindows.java
+++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLocusWindows.java
@@ -93,8 +93,7 @@ public class TraverseByLocusWindows extends TraversalEngine {
             LocusContext locus = getLocusContext(wrappedIter, interval);
             readIter.close();
 
-            //sum = carryWalkerOverInterval(walker, sum, locus);
-            System.out.println(locus.getLocation());
+            sum = carryWalkerOverInterval(walker, sum, locus);
         }
         return sum;
     }
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java
index 9949c62d8..c9b0d1f6b 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java
@@ -104,7 +104,7 @@ public class  IntervalCleanerWalker extends LocusWindowWalker<Integer, Integer>
                  !read.getDuplicateReadFlag() &&
                  read.getMappingQuality() != 0 &&           
                  read.getAlignmentStart() != SAMRecord.NO_ALIGNMENT_START &&
-		 (allow454 || !Utils.is454Read(read, getToolkit().getEngine().getSAMHeader())) )
+		         (allow454 || !Utils.is454Read(read, getToolkit().getEngine().getSAMHeader())) )
                 goodReads.add(read);
             else if ( writer != null && !cleanedReadsOnly )
                 readsToWrite.add(new ComparableSAMRecord(read));