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outputting the RG information 

setReadGroup now sets the read group attribute for the GATKSAMRecord
This commit is contained in:
Mauricio Carneiro 2011-11-09 23:34:29 -05:00
parent 315ac68b0b
commit 0d8983feee
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java
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@ -167,6 +167,7 @@ public class GATKSAMRecord extends BAMRecord {
public void setReadGroup( final GATKSAMReadGroupRecord readGroup ) { public void setReadGroup( final GATKSAMReadGroupRecord readGroup ) {
mReadGroup = readGroup; mReadGroup = readGroup;
retrievedReadGroup = true; retrievedReadGroup = true;
setAttribute("RG", mReadGroup.getId()); // todo -- this should be standardized, but we don't have access to SAMTagUtils!
} }
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