diff --git a/public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java b/public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java index d95570d9b..3fe1060dd 100755 --- a/public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java +++ b/public/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java @@ -167,6 +167,7 @@ public class GATKSAMRecord extends BAMRecord { public void setReadGroup( final GATKSAMReadGroupRecord readGroup ) { mReadGroup = readGroup; retrievedReadGroup = true; + setAttribute("RG", mReadGroup.getId()); // todo -- this should be standardized, but we don't have access to SAMTagUtils! } ///////////////////////////////////////////////////////////////////////////////