zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Oops. Fixed duplicate reference to the reference. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@353 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-09 21:27:57 +00:00
parent 9afa101465
commit 0d825ccfc1
1 changed files with 0 additions and 7 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

7
java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
View File

@ -242,13 +242,6 @@ public class GenomeAnalysisTK extends CommandLineProgram {
throw new RuntimeException( "Unable to access walker", ex );
}
// Prepare the sort ordering w.r.t. the sequence dictionary
FastaSequenceFile2 refFile = null;
if (REF_FILE_ARG != null) {
refFile = new FastaSequenceFile2(REF_FILE_ARG);
GenomeLoc.setupRefContigOrdering(refFile);
}
MicroManager microManager = null;
// Try to get the walker specified