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When running CombineVariants with -mergeInfoWithMaxAC the set field will be added appropriately 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5974 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2011-06-10 14:35:48 +00:00
parent f8ffda6835
commit 0d6ce91614
1 changed files with 4 additions and 1 deletions
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5
java/src/org/broadinstitute/sting/gatk/contexts/variantcontext/VariantContextUtils.java
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@ -586,7 +586,10 @@ public class VariantContextUtils {
setValue = Utils.join("-", s);
}
if ( setKey != null ) attributes.put(setKey, setValue);
if ( setKey != null ) {
attributes.put(setKey, setValue);
if( mergeInfoWithMaxAC ) { maxACAttributes.put(setKey, setValue); }
}
}
if ( depth > 0 )