From 0d4779872127a760a63e0b5ea9d08e62f2880554 Mon Sep 17 00:00:00 2001
From: kcibul <kcibul@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 5 Aug 2009 18:29:21 +0000
Subject: [PATCH] made booster distance a parameter

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1385 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/HybSelPerformanceWalker.java | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
index a08e1420f..d0d28601c 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
@@ -37,7 +37,8 @@ public class HybSelPerformanceWalker extends LocusWalker<Integer, HybSelPerforma
     @Argument(fullName="booster", required=false, doc="interval list of booster baits")
     public File BOOSTER_FILE;
 
-    public Integer BOOSTER_DISTANCE = 250; // how far away can a booster be to "hit" its target?
+    @Argument(fullName="booster_distance", required=false, doc="distance up to which a booster can affect a target")
+    public Integer BOOSTER_DISTANCE = 100; // how far away can a booster be to "hit" its target?
 
     public static class TargetInfo {
         public int counts = 0;