diff --git a/scala/qscript/chartl/batchMergePipeline.q b/scala/qscript/chartl/batchMergePipeline.q index 92042c873..7eb693a34 100755 --- a/scala/qscript/chartl/batchMergePipeline.q +++ b/scala/qscript/chartl/batchMergePipeline.q @@ -16,8 +16,6 @@ class batchMergePipeline extends QScript { @Argument(doc="reference file",shortName="ref") var ref: File = _ @Argument(doc="batched output",shortName="batch") var batchOut: File = _ - def addAll( cmds : List[CommandLineFunction]) : Unit = { cmds.foreach( c => add(c)) } - def script = { var vcfs : List[File] = extractFileEntries(vcfList) @@ -29,4 +27,4 @@ class batchMergePipeline extends QScript { def extractFileEntries(in: File): List[File] = { return (new XReadLines(in)).readLines.toList.map( new File(_) ) } -} \ No newline at end of file +}