Fixing bugs caught by Eric

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* if a read starts with insertion, and is part of a read that overlaps both the consensus and the variant region, and the insertion is the first base of this read. Don't try to remove it.
   * keep the last header element in a variant region to prevent adjacent reads starting with insertions from breaking when trying to remove the header element before the insertion.

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This commit is contained in:

Mauricio Carneiro 2012-06-11 17:32:22 -04:00

parent e0fbffac3a

commit 0c98c34f5f

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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