From 0c562756eb5b96a36485abe40e3907940643b8b7 Mon Sep 17 00:00:00 2001 From: Christopher Hartl Date: Thu, 2 Feb 2012 10:30:09 -0500 Subject: [PATCH] Add a memory limit so this thing doesn't get killed on the farm --- .../org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala | 1 + 1 file changed, 1 insertion(+) diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala index 2f691b907..913a62e26 100644 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala @@ -118,6 +118,7 @@ class VcfToPed extends QScript { toPed.variant = variants } toPed.metaData = meta + toPed.memoryLimit = 2 val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk) val tBed = new File(tmpdir,base+".bed") val bim = new File(tmpdir,base+".bim")