Add a memory limit so this thing doesn't get killed on the farm

2012-02-02 10:30:09 -05:00 · 2012-02-02 10:30:09 -05:00 · 0c562756eb
parent 45bf2562cc
commit 0c562756eb
1 changed files with 1 additions and 0 deletions
--- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala
@ -118,6 +118,7 @@ class VcfToPed extends QScript {
          toPed.variant = variants
        }
        toPed.metaData = meta
+        toPed.memoryLimit = 2
        val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk)
        val tBed = new File(tmpdir,base+".bed")
        val bim = new File(tmpdir,base+".bim")