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Botched some boolean logic. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@658 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2009-05-11 22:53:52 +00:00
parent 23e9e29964
commit 0bca588629
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java
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@ -31,7 +31,7 @@ public class ReadErrorRateWalker extends ReadWalker<boolean[], int[]> {
* @return true if the read can be processed, false if it should be ignored * @return true if the read can be processed, false if it should be ignored
*/ */
public boolean filter(char[] ref, SAMRecord read) { public boolean filter(char[] ref, SAMRecord read) {
return (read.getCigar().numCigarElements() == 1 && read.getReadLength() > ref.length); return (read.getCigar().numCigarElements() == 1 && read.getReadLength() <= ref.length);
} }
/** /**