diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java index 128dde640..c6d5e4cd3 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java @@ -31,7 +31,7 @@ public class ReadErrorRateWalker extends ReadWalker { * @return true if the read can be processed, false if it should be ignored */ public boolean filter(char[] ref, SAMRecord read) { - return (read.getCigar().numCigarElements() == 1 && read.getReadLength() > ref.length); + return (read.getCigar().numCigarElements() == 1 && read.getReadLength() <= ref.length); } /**